Dataset

Gene expression data

Count matrices and metadata are available below. For more information on how to work with these, visit the GitHub page

Downloads
  • QC-ed raw gene expression counts (mtx format) [coming soon]
  • QC-ed genes for raw gene expression counts (tsv format) [coming soon]
  • QC-ed and SCT normalized counts (mtx format) [coming soon]
  • QC-ed genes for SCT normalized counts (tsv format) [coming soon]
  • QC-ed RNA barcodes (tsv format) [coming soon]

  • QC-ed raw ATAC counts (mtx format) [coming soon]
  • QC-ed region names for raw ATAC counts (tsv format) [coming soon]
  • QC-ed ATAC barcodes (tsv format) [coming soon]

  • Cell type classification for every cell barcode [coming soon]
  • Sample assignment and condition for every cell barcode [coming soon]
Changelog
2026-06-xx: Initial data release
Raw data
Raw gene expression data is freely available and has been deposited at the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number [coming soon]. To gain access to the genotype data, please contact Lifelines Data Management